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		<title>Big data superlatives</title>
		<link>http://wasifmalik.com/2012/05/23/big-data-superlatives/</link>
		<comments>http://wasifmalik.com/2012/05/23/big-data-superlatives/#comments</comments>
		<pubDate>Wed, 23 May 2012 13:18:27 +0000</pubDate>
		<dc:creator>wmalik</dc:creator>
				<category><![CDATA[Random]]></category>
		<category><![CDATA[Thesis]]></category>

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		<description><![CDATA[I was writing the abstract and introduction part of my thesis report and thought it will be good to read the abstracts of some papers related to big data in general. It is funny how each abstract tries to say the same thing but using different words. For example, I noticed that it is very [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=wasifmalik.com&#038;blog=9304057&#038;post=43&#038;subd=wasifmalik&#038;ref=&#038;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I was writing the abstract and introduction part of my thesis report and thought it will be good to read the abstracts of some papers related to big data in general.<br />
It is funny how each abstract tries to say the same thing but using different words. For example, I noticed that it is very common for an abstract to start with how data is increasing and how the world will end if we are not able to efficiently store and analyse it. </p>
<p>Here are some of the superlatives I found:</p>
<p>&#8220;Increasingly enormous data sets&#8221;<br />
&#8220;Today&#8217;s humongous data sets&#8221;<br />
&#8220;ultra-large-scale data&#8221;<br />
&#8220;extremely large data sets&#8221;<br />
&#8220;enormous data sets&#8221;</p>
<p>I was thinking of coming up with a new superlative for my abstract. How does &#8220;Insanely huge&#8221; or &#8220;Frickin huge&#8221; or &#8220;shitload of data&#8221; sound? <img src='http://s0.wp.com/wp-includes/images/smilies/icon_smile.gif' alt=':)' class='wp-smiley' /> </p>
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		<title>Filesystem inconsistency in Linux</title>
		<link>http://wasifmalik.com/2012/02/29/filesystem-inconsistency-in-linux/</link>
		<comments>http://wasifmalik.com/2012/02/29/filesystem-inconsistency-in-linux/#comments</comments>
		<pubDate>Wed, 29 Feb 2012 16:30:05 +0000</pubDate>
		<dc:creator>wmalik</dc:creator>
				<category><![CDATA[Random]]></category>

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		<description><![CDATA[I found something very interesting today, which seems like a bug in the linux kernel 2.6.35. Even if it is not a bug, it is still an inconsistent view of the filesystem. I googled it, but couldn&#8217;t find anything relevant. Here is how you can reproduce it: Open two terminals, lets call them Terminal A [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=wasifmalik.com&#038;blog=9304057&#038;post=37&#038;subd=wasifmalik&#038;ref=&#038;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I found something very interesting today, which seems like a bug in the linux kernel 2.6.35. Even if it is not a bug, it is still an inconsistent view of the filesystem. I googled it, but couldn&#8217;t find anything relevant. </p>
<p>Here is how you can reproduce it:</p>
<p>Open two terminals, lets call them <strong>Terminal A</strong> and <strong>Terminal B</strong>. In Terminal A, do the following:<br />
<code><br />
mkdir /tmp/dummydir<br />
cd /tmp/dummydir<br />
touch file.txt<br />
</code></p>
<p>Now in Terminal B, do the following:<br />
<code><br />
cd /tmp/dummydir<br />
ls<br />
</code><br />
If your eyesight is good, you should see a file named file.txt. Now in Terminal A, do the following:<br />
<code><br />
cd ..<br />
rm -rf dummydir<br />
mkdir dummydir<br />
cd dummydir<br />
touch file.txt<br />
ls<br />
</code><br />
You should see file.txt. Now in Terminal B, do the following:<br />
<code><br />
ls<br />
</code><br />
You will not see any file, although you would expect to see file.txt because you are inside /tmp/dummydir.<br />
One explanation of this behavior is that the inodes for both directories are different, and the current working directory of terminal B is still pointing to the old inode. This can be confirmed by doing the following in both terminals:<br />
<code><br />
stat .<br />
</code></p>
<p>I am not sure if it is a well known behavior, but it&#8217;s interesting nonetheless. </p>
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		<title>Some Alias Love</title>
		<link>http://wasifmalik.com/2012/02/23/some-alias-love/</link>
		<comments>http://wasifmalik.com/2012/02/23/some-alias-love/#comments</comments>
		<pubDate>Thu, 23 Feb 2012 14:36:46 +0000</pubDate>
		<dc:creator>wmalik</dc:creator>
				<category><![CDATA[Random]]></category>

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		<description><![CDATA[If you have been using Unix/Linux shells for some time, you would know that typing long shell commands for basic tasks like searching for a file in a directory can be a bit annoying. So what do smart shell users do to solve this problem? They create aliases. They are really easy to create and extremely [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=wasifmalik.com&#038;blog=9304057&#038;post=31&#038;subd=wasifmalik&#038;ref=&#038;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>If you have been using Unix/Linux shells for some time, you would know that typing long shell commands for basic tasks like searching for a file in a directory can be a bit annoying. So what do smart shell users do to solve this problem? They create aliases. They are really easy to create and extremely useful. I have a lot of aliases defined in my ~/.bashrc but one of my favorites and the one I use most often is:</p>
<p><code>alias fname='find . -name'</code></p>
<p>It lets me search files recursively in a directory starting from the current working directory. Some other aliases I use are:</p>
<p><code>alias gits='git status'</code></p>
<p>and</p>
<p><code>alias gitb='git branch'</code></p>
<p>I would like to know what aliases you are using for your everyday use, feel free to leave a comment.</p>
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		<title>The World of File Systems (Part 1)</title>
		<link>http://wasifmalik.com/2012/01/25/the-world-of-file-systems-part-1/</link>
		<comments>http://wasifmalik.com/2012/01/25/the-world-of-file-systems-part-1/#comments</comments>
		<pubDate>Wed, 25 Jan 2012 10:47:22 +0000</pubDate>
		<dc:creator>wmalik</dc:creator>
				<category><![CDATA[Thesis]]></category>
		<category><![CDATA[extents]]></category>
		<category><![CDATA[filesystems]]></category>
		<category><![CDATA[thesis]]></category>

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		<description><![CDATA[I have been reading lots of interesting papers lately to improve my overall understanding of file systems and thought it would be nice to write about a few important concepts. &#160; Filesystem A filesystem basically lets you read, write and update data on a storage device. It mostly provides the abstraction of files and directories. [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=wasifmalik.com&#038;blog=9304057&#038;post=12&#038;subd=wasifmalik&#038;ref=&#038;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I have been reading lots of interesting papers lately to improve my overall understanding of file systems and thought it would be nice to write about a few important concepts.</p>
<p>&nbsp;</p>
<p><strong>Filesystem</strong></p>
<p>A filesystem basically lets you read, write and update data on a storage device. It mostly provides the abstraction of files and directories. No matter how boring filesystems seem to an average user, they solve some interesting problems. One important thing to mention here is that there is no such thing as <strong>the-best-file-system, </strong>because there are various types of storage devices (disks, SSDs, tape drives, flash drives etc.), and each of them has different characteristics. Furthermore, there are different types of user applications, which have different types of access patterns (think read intensive, write intensive etc), and it becomes difficult (or impossible) to design a filesystem which works well in all scenarios. So, filesystems are usually designed for specific storage devices and application access patterns.</p>
<p>File systems are typically categorized into two types: <strong>Disk file systems </strong>(or Local file systems as I like to call them), and <strong>Distributed file systems.</strong></p>
<p>The disk file systems are further divided into many categories, out of which <strong>Extent file systems </strong>and <strong>Log Structured file systems</strong> are the most interesting.</p>
<p>&nbsp;</p>
<p><strong>Extent File Systems</strong></p>
<p>These file systems are much more efficient than conventional file systems in block allocation and reads/writes because they make use of something called <strong>extents</strong>.</p>
<p>To understand extents, let&#8217;s see how old file systems (<strong>FAT</strong>, <strong>ext2</strong>, <strong>ext3</strong> etc.) work. These file systems split a file into blocks (usually 4KB) and store metadata for each and every block. So for a 128MB file, 32 blocks will be allocated (each having its own metadata structure), and no attempt will be made to save these blocks in a contiguous area. So writes will be pretty slow, because block allocations will need to be done as the file is being written. Furthermore, reads will also be slow because of high &#8220;seek&#8221; times. In addition to these problems, the file system will also become fragmented over time.</p>
<p>An extent file system allocates <strong>extents</strong> for a file rather than single blocks.  An <strong>extent</strong> is a contiguous area of storage in a file system. So instead of allocating a block one by one, the file system allocates a contiguous sequence of blocks in one go. This not only improves the read/write performance (because seek time is reduced), but also helps in preventing the file system from becoming fragmented. Of course, the file system can still become fragmented because it is not always possible to allocate blocks contiguously, but the situation is much better than old file systems. Another big benefit of using extents is that very little space is required to store the metadata of blocks on disk, because metadata is stored for each extent, and not for each block. Due to the above mentioned reasons, most of the modern file systems (<strong>ext4</strong>, <strong>Btrfs</strong>, <strong>XFS</strong>, <strong>Reiser4 </strong>etc.) make use of extents for block allocation. Obviously modern file systems do much more than allocating blocks, but nonetheless it is one of the most fundamental aspect in file system design.</p>
<p>That&#8217;s it for now. In the next posts, I will write about <strong>Log Structured</strong> file systems, and <strong>Distributed</strong> file systems. Yesterday, I gave a little overview of some popular file systems to my colleagues at SICS. <a href="https://docs.google.com/presentation/d/10QsXVJ34htl-k1IqI3l8CI-lTBET45aIezzSk5jreXM/edit" target="_blank">Here</a> are the slides.</p>
<p>If you are interested in knowing more about file systems, BUY MY BOOK. Just kidding.</p>
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		<title>Let the thesis begin!</title>
		<link>http://wasifmalik.com/2012/01/18/let-the-thesis-begin/</link>
		<comments>http://wasifmalik.com/2012/01/18/let-the-thesis-begin/#comments</comments>
		<pubDate>Wed, 18 Jan 2012 16:12:20 +0000</pubDate>
		<dc:creator>wmalik</dc:creator>
				<category><![CDATA[Thesis]]></category>

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		<description><![CDATA[I have officially started working on my thesis today at Swedish Institute of Computer Science (SICS). So what is my thesis about? Well, I will be continuing work on a project I was already doing during the last semester. We basically aim to make the Hadoop Distributed File System (HDFS) Namenode highly available and horizontally [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=wasifmalik.com&#038;blog=9304057&#038;post=5&#038;subd=wasifmalik&#038;ref=&#038;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I have officially started working on my thesis today at <a href="http://sics.se" target="_blank">Swedish Institute of Computer Science (SICS)</a>. So what is my thesis about? Well, I will be continuing work on a project I was already doing during the last semester. We basically aim to make the Hadoop Distributed File System (HDFS) Namenode <strong>highly available</strong> and <strong>horizontally scalable</strong>. If you are curious about how we are doing it, you can read about it <a href="http://lalith.in/2011/12/15/towards-a-scalable-and-highly-available-namenode/">here</a> and <a href="http://blogs.oracle.com/MySQL/entry/using_mysql_cluster_to_protect">here</a>, or you can see the presentation <a href="https://docs.google.com/presentation/d/16JsCmNDplMIPm1-x455zqxpEd9g-k386ZgAlqi1AKsE/edit?hl=en_US#slide=id.p" target="_blank">here</a>.</p>
<p>At the moment, I am trying to understand the techniques used by file systems (like ext3, ext4, Btrfs, XFS, ReiserFS, <a href="https://www.facebook.com/note.php?note_id=76191543919">Haystack</a> (Facebook), <a href="http://blogs.msdn.com/b/seliot/archive/2010/11/05/cosmos-petabytes-perfectly-processed-perfunctorily.aspx">Cosmos</a> (Microsoft), <a href="http://kosmosfs.sourceforge.net/about.html">CloudStore</a>) for inodes/block management, reliability and efficiency. Reading is boring, but it will give me a good idea of things to keep in mind while I am writing code.</p>
<p>I will also give a talk about these file systems next week, and will also post it here.</p>
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